Bioinformatics Softwares Tools

RasMol : The best to date 3D program is RasMol, originally developed by Roger Sayle. To use this program it must first be downloaded onto your computer.

Download RasMol

Clustal W 1.81:
Multiple Sequence Alignment Program

[ Clustal W ] Download ClustalW
JEMBOSS: Java based GUI for EMBOSS EMBOSS 2.8.0 : The European Molecular Biology Open Software Suite. Download Jemboss EMBOSS/EMBOSS-2.8.0 .tar.gz Download EMBOSS
  EMBOSS-2.8.0-4.gcc.i386.rpm Download EMBOSS
  EMBOSS-2.8.0-4.icc.i686.rpm Download EMBOSS
  JEMBOSS 2.8.0 : Java based GUI for EMBOSS
  EMBOSS-Jemboss-2.8.0-4.gcc.i386.rpm Download Jemboss
Clustal X is a powerful multiple sequence alignment program with a user-friendly graphical interface. (Windows 95/98)
Dowload Clustal X(543 KB)
Gibbs 9.95 
Gibbs Motif Sampler 
[GIBBS ] Download GIBBS
DNATools 6.0 is a comprehensive program package for routine handling and analysis of nucleotide and protein sequences. The program includes functions for batch renaming, editing and annotating sequences, restriction mapping, translation, automated blast search and information retrieval, codon analysis, primer design and ordering and a lot more...
DNATools only runs on 32bit Windows based PC's *) and it is not possible to run the program on Macs, Unix and other non-Windows computers
Download DNA Tools
MEME/MAST 3.0.4 
MEME (motif discovery tool) and MAST (motif search tool) 
Amplify v1.2 software is for use in designing, analyzing, and simulating experiments involving the polymerase chain reaction (PCR). Given a template sequence and two primers, it will predict the possible outputs of the PCR, taking into account also weak matches to the target sequence. 
Download Amplify(260.9 KB)
Basic Local Alignment Tool 
[ NCBI BLAST ] Download NCBI
Meta-MEME is a software toolkit for building and using motif-based hidden Markov models of DNA and proteins. The input to Meta-MEME is a set of similar protein sequences, as well as a set of motif models discovered by MEME. Meta-MEME combines these models into a single, motif-based hidden Markov model and uses this model to produce a multiple alignment of the original set of sequences and to search a sequence database for homologs(Platform:sun)
Download MEME (332.6 KB)
PHYLIP 3.6a3 
Phylogeny Inference Package
[ PHYLIP ] Download PHYLIP
pDRAW32(Freeware DNA cloning, analysis and visualization software.). To run pDRAW32 you need a PC running Windows 95, 98, ME, NT4, 2000, XP.
Dowload pDRAW .
Primer3 0.9 
PCR primer picking tool 
[ Primer3 ] Download Primer
PrimerDesign version 1.10 is a DOS-program to choose primer for PCR or oligonucleotide probes. It is tailored to check known sequences for repeats and unique sequences and subsequencly to create prober primers according to this data. A lot of constrains are available to meet your conditions. It can handle up to 32000 base pairs. Click here to see help
Download PrimerDesign (234.7 KB)
QRNA 2.0.1 
Prototype non-coding RNA genefinder 
[ QRNA ] Download QRNA
cn3D: It is an application software used to view 3D structure, sequence, alignment and powerful annotation of protein.
Download cn3D
cn3D: It is an application software used to view 3D structure, sequence, alignment and powerful annotation of protein.
Download cn3D
PHYLIP 3.6 Beta Version: 
Phylogeny Inference Package Download Phylip
ReadSeq 1:
Reads and writes nucleic/protein sequences in various formats 
[ ReadSeq ] Download ReadSeq
iOligo is a state-of-the-art primer design program. Version/File 1.0
Download iOligo (Demo)
Program to align cDNA and genomic DNA 
[ SIM ] Download SIM
TreeView : Software Tool used to draw a tree diagram with sequence data and binary data.
Download Tree View
Wise 2 2.0 : Programs to compare DNA and protein sequences 
[ Wise 2 ] Download Wise
Chem2Pac is intended to be a kind of computational chemistry integrator, which has a multiple document interface, a molecular rendering utility, and allows the manipulation of various files.
Download Chem2Pac
Bioperl 1.2.3 : Perl tools for bioinformatics, genomics and life science research.
[ Bioperl ] Download Bioperl
GeneTree is an experimental program for comparing gene and species trees. It is available for both Windows and Apple Macs.Current release is 1.3.0 (4 October 2001) (win95/Nt).
Download GeneTree(983KB)

GDE: The genetic data enviroment (GDE) is a graphical veiw for manipulating DNA and aminoacid sequences for phylogenetic analysisi. Sequences can be edited and analyzed by many others bioinformatics software in our system.

GDElinux.tar.gz Download GDE(2.4MB)

Xview libraries:

xview-3.2p1.4-6.i386.rpm Download Xview(0.5Mb)

xview-clients-3.2p1.4-6.i386.rpm Download Xview(0.4 Mb) 

Probe allows one to evaluate atomic packing, either within or between molecules. It generates "contact dots" where atoms are in close contact. 
Download Probe(159.6KB)

MOLMOL is a molecular graphics program for displaying, analyzing, and manipulating the three-dimensional structure of biological macromolecules, with special emphasis on the study of protein or DNA structures determined by NMR. The program runs on UNIX and Windows NT/95/98/2000 and is freely available.
Download MOLMOL

RNAdraw: an integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows.
Download RNA draw(28.8KB)

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The website is maintained and updated by
Bioinformatics Centre, Central Plantation Crops Research Institute Kasaragod - 671 124,Kerala,INDIA Tel: 04994-232974,894 FAX: +91-4994-232 322 Email; Website last updated on 2 Jan 2014